Exome sequencing of 47 chinese families with cone-rod dystrophy: mutations in 25 known causative genes

PLoS One. 2013 Jun 11;8(6):e65546. doi: 10.1371/journal.pone.0065546. Print 2013.

Abstract

Objective: The goal of this study was to identify mutations in 25 known causative genes in 47 unrelated Chinese families with cone-rod dystrophy (CORD).

Methods: Forty-seven probands from unrelated families with CORD were recruited. Genomic DNA prepared from leukocytes was analyzed by whole exome sequencing. Variants in the 25 genes were selected and then validated by Sanger sequencing.

Results: Fourteen potential pathogenic mutations, including nine novel and five known, were identified in 10 of the 47 families (21.28%). Homozygous, compound heterozygous, and hemizygous mutations were detected in three, four, or three families, respectively. The 14 mutations in the 10 families were distributed among CNGB3 (three families), PDE6C (two families), ABCA4 (one family), RPGRIP1 (one family), RPGR (two families), and CACNA1F (one family).

Conclusions: This study provides a brief view on mutation spectrum of the 25 genes in a Chinese cohort with CORD. Identification of novel mutations enriched our understanding of variations in these genes and their associated phenotypes. To our knowledge, this is the first systemic exome-sequencing analysis of all of the 25 CORD-associated genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ATP-Binding Cassette Transporters / genetics
  • Calcium Channels, L-Type / genetics
  • China
  • Cyclic Nucleotide Phosphodiesterases, Type 6 / genetics
  • Cyclic Nucleotide-Gated Cation Channels / genetics
  • Cytoskeletal Proteins
  • Exome / genetics*
  • Eye Proteins / genetics
  • Humans
  • Mutation*
  • Pedigree
  • Proteins / genetics
  • Retinitis Pigmentosa / genetics*

Substances

  • ABCA4 protein, human
  • ATP-Binding Cassette Transporters
  • CACNA1F protein, human
  • CNGB3 protein, human
  • Calcium Channels, L-Type
  • Cyclic Nucleotide-Gated Cation Channels
  • Cytoskeletal Proteins
  • Eye Proteins
  • Proteins
  • RPGR protein, human
  • RPGRIP1 protein, human
  • Cyclic Nucleotide Phosphodiesterases, Type 6
  • PDE6C protein, human

Grants and funding

This study was supported by the National Natural Science Foundation of China (81170881, U1201221, http://www.nsfc.gov.cn/Portal0/default152.htm), Guangdong Translational Medicine Public Platform, the "985 project" of Sun Yat-sen University, and the Fundamental Research Funds of the State Key Laboratory of Ophthalmology. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.