Complex between α-bungarotoxin and an α7 nicotinic receptor ligand-binding domain chimaera

Biochem J. 2013 Sep 1;454(2):303-310. doi: 10.1042/BJ20130636.

Abstract

To identify high-affinity interactions between long-chain α-neurotoxins and nicotinic receptors, we determined the crystal structure of the complex between α-btx (α-bungarotoxin) and a pentameric ligand-binding domain constructed from the human α7 AChR (acetylcholine receptor) and AChBP (acetylcholine-binding protein). The complex buries ~2000 Ų (1 Å=0.1 nm) of surface area, within which Arg³⁶ and Phe³² from finger II of α-btx form a π-cation stack that aligns edge-to-face with the conserved Tyr¹⁸⁴ from loop-C of α7, while Asp³⁰ of α-btx forms a hydrogen bond with the hydroxy group of Tyr¹⁸⁴. These inter-residue interactions diverge from those in a 4.2 Å structure of α-ctx (α-cobratoxin) bound to AChBP, but are similar to those in a 1.94 Å structure of α-btx bound to the monomeric α1 extracellular domain, although compared with the monomer-bound complex, the α-btx backbone exhibits a large shift relative to the protein surface. Mutational analyses show that replacing Tyr¹⁸⁴ with a threonine residue abolishes high-affinity α-btx binding, whereas replacing with a phenylalanine residue maintains high affinity. Comparison of the α-btx complex with that coupled to the agonist epibatidine reveals structural rearrangements within the binding pocket and throughout each subunit. The overall findings highlight structural principles by which α-neurotoxins interact with nicotinic receptors.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Substitution
  • Animals
  • Binding Sites
  • Bridged Bicyclo Compounds, Heterocyclic / chemistry
  • Bridged Bicyclo Compounds, Heterocyclic / metabolism
  • Bungarotoxins / chemistry
  • Bungarotoxins / metabolism*
  • Bungarus
  • Carrier Proteins / chemistry
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism*
  • Cobra Neurotoxin Proteins / chemistry
  • Cobra Neurotoxin Proteins / metabolism
  • Humans
  • Ligands
  • Lymnaea
  • Models, Molecular*
  • Mutant Proteins / chemistry
  • Mutant Proteins / metabolism
  • Neurotoxins / chemistry
  • Neurotoxins / metabolism*
  • Nicotinic Agonists / chemistry
  • Nicotinic Agonists / metabolism
  • Peptide Fragments / chemistry
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Pyridines / chemistry
  • Pyridines / metabolism
  • Receptors, Nicotinic / chemistry
  • Receptors, Nicotinic / genetics
  • Receptors, Nicotinic / metabolism*
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / metabolism
  • Reptilian Proteins / chemistry
  • Reptilian Proteins / metabolism*
  • alpha7 Nicotinic Acetylcholine Receptor

Substances

  • AChBP protein, Lymnaea
  • Bridged Bicyclo Compounds, Heterocyclic
  • Bungarotoxins
  • Carrier Proteins
  • Chrna7 protein, human
  • Cobra Neurotoxin Proteins
  • Ligands
  • Mutant Proteins
  • Neurotoxins
  • Nicotinic Agonists
  • Peptide Fragments
  • Pyridines
  • Receptors, Nicotinic
  • Recombinant Fusion Proteins
  • Reptilian Proteins
  • alpha7 Nicotinic Acetylcholine Receptor
  • alpha-cobratoxin
  • epibatidine