AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

Gut. 2014 Jul;63(7):1069-80. doi: 10.1136/gutjnl-2013-304909. Epub 2013 Jul 29.


Background: Inflammatory bowel disease (IBD) is driven by a seemingly aberrant immune response to the gut microbiota with disease development dictated by genetics and environmental factors. A model exemplifying this notion is our recent demonstration that colonisation of adherent-invasive Escherichia coli (AIEC) during microbiota acquisition drove chronic colitis in mice lacking the flagellin receptor TLR5 (T5KO). T5KO colitis persisted beyond AIEC clearance and requires TLR4 and the NLRC4 inflammasome. We hypothesised that AIEC instigates chronic inflammation by increasing microbial lipopolysaccharide (LPS) and flagellin levels.

Goal: Examine if transient AIEC colonisation lastingly alters levels of LPS and flagellin and changes microbiota composition.

Methods: Germ-free mice (wild type (WT) and T5KO) were inoculated with AIEC strain LF82 and placed in standard housing allowing a complex microbiota that eliminated AIEC in both mice strains. Faeces were assayed for the inflammatory marker, lipocalin-2, bacterial loads, and microbiota composition by pyrosequencing. Faecal LPS and flagellin bioactivity were measured via a cell-based reporter assay.

Results: Transient AIEC colonisation, in WT mice, did not alter inflammatory markers, bacterial loads, microbiota composition, nor its pro-inflammatory potential. By contrast, transient AIEC colonisation of T5KO mice drove chronic inflammation which correlated with microbiota components having higher levels of bioactive LPS and flagellin. Such AIEC-induced elevation of LPS and flagellin persisted well beyond AIEC clearance, required AIEC be flagellated, and was associated with alteration in microbiota species composition including a loss of species diversity.

Conclusions: AIEC, and perhaps other pathobionts, may instigate chronic inflammation in susceptible hosts by altering the gut microbiota composition so as to give it an inherently greater ability to activate innate immunity/pro-inflammatory gene expression.


Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acute-Phase Proteins / metabolism
  • Animals
  • Bacterial Adhesion / immunology
  • Bacterial Load
  • Biomarkers / metabolism
  • Chronic Disease
  • Colitis / immunology
  • Colitis / microbiology*
  • Colon / microbiology*
  • DNA, Bacterial / analysis
  • Enzyme-Linked Immunosorbent Assay
  • Escherichia coli / genetics
  • Escherichia coli / immunology
  • Escherichia coli Infections / complications*
  • Escherichia coli Infections / immunology
  • Feces / chemistry
  • Feces / microbiology
  • Flagellin / metabolism
  • Germ-Free Life
  • Immunity, Innate
  • Intestinal Mucosa / immunology
  • Intestinal Mucosa / microbiology*
  • Lipocalin-2
  • Lipocalins / metabolism
  • Lipopolysaccharides / metabolism
  • Mice
  • Mice, Knockout
  • Microbiota*
  • Oncogene Proteins / metabolism
  • Sequence Analysis, DNA
  • Toll-Like Receptor 5 / deficiency*


  • Acute-Phase Proteins
  • Biomarkers
  • DNA, Bacterial
  • Lipocalin-2
  • Lipocalins
  • Lipopolysaccharides
  • Oncogene Proteins
  • Toll-Like Receptor 5
  • Lcn2 protein, mouse
  • Flagellin