Motif-guided identification of a glycoside hydrolase family 1 α-L-arabinofuranosidase in Bifidobacterium adolescentis

Biosci Biotechnol Biochem. 2013;77(8):1709-14. doi: 10.1271/bbb.130279. Epub 2013 Aug 7.

Abstract

Members of glycoside hydrolase family 1 (GH1) cleave glycosidic linkages with a variety of physiological roles. Here we report a unique GH1 member encoded in the genome of Bifidobacterium adolescentis ATCC 15703. This enzyme, BAD0156, was identified from over 2,000 GH1 sequences accumulated in a database by a genome mining approach based on a motif sequence. A recombinant BAD0156 protein was characterized to confirm that this enzyme alone specifically hydrolyzes p-nitrophenyl-α-L-arabinofuranoside among the 24 p-nitrophenyl-glycosides examined. Among natural glycosides, α-1,5-linked arabino-oligosaccharides served as substrates, but arabinan, debranched arabinan, arabinoxylan, and arabinogalactan did not. A time course analysis of arabino-oligosaccharide hydrolysis indicated that BAD0156 is an exo-acting enzyme. These results suggest that BAD0156 is an α-L-arabinofuranosidase. This is the first report of a GH1 enzyme that acts specifically on arabinosides, providing information on GH1 substrate specificity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs / genetics*
  • Bifidobacterium / enzymology*
  • Genome, Bacterial
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / metabolism*
  • Glycosides / metabolism
  • Hydrolysis
  • Protein Structure, Tertiary
  • Substrate Specificity
  • Xylans / metabolism

Substances

  • Glycosides
  • Xylans
  • arabinoxylan
  • Glycoside Hydrolases
  • alpha-N-arabinofuranosidase