A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants

Trends Plant Sci. 2014 Jan;19(1):5-9. doi: 10.1016/j.tplants.2013.08.008. Epub 2013 Sep 18.

Abstract

Members of the plant NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER (NRT1/PTR) family display protein sequence homology with the SLC15/PepT/PTR/POT family of peptide transporters in animals. In comparison to their animal and bacterial counterparts, these plant proteins transport a wide variety of substrates: nitrate, peptides, amino acids, dicarboxylates, glucosinolates, IAA, and ABA. The phylogenetic relationship of the members of the NRT1/PTR family in 31 fully sequenced plant genomes allowed the identification of unambiguous clades, defining eight subfamilies. The phylogenetic tree was used to determine a unified nomenclature of this family named NPF, for NRT1/PTR FAMILY. We propose that the members should be named accordingly: NPFX.Y, where X denotes the subfamily and Y the individual member within the species.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Anion Transport Proteins / classification*
  • Anion Transport Proteins / genetics
  • Anion Transport Proteins / metabolism
  • Arabidopsis / genetics
  • Arabidopsis / metabolism
  • Membrane Transport Proteins / classification*
  • Membrane Transport Proteins / genetics
  • Membrane Transport Proteins / metabolism
  • Nitrate Transporters
  • Phylogeny
  • Plant Proteins / classification
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Plants / genetics*
  • Plants / metabolism
  • Sequence Homology, Amino Acid
  • Substrate Specificity

Substances

  • Anion Transport Proteins
  • Membrane Transport Proteins
  • Nitrate Transporters
  • Plant Proteins
  • peptide permease