Crystallization and preliminary X-ray diffraction of the RNA demethylase ALKBH5

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Nov;69(Pt 11):1231-4. doi: 10.1107/S1744309113024858. Epub 2013 Oct 17.

Abstract

N(6)-methyladenosine (m6A) is a ubiquitous modification found in mammalian mRNA and long noncoding RNA. ALKBH5 is a member of the iron(II)- and 2-oxoglutarate-dependent AlkB oxygenase family and has been shown to catalyze the oxidative demethylation of N(6)-methyladenosine in RNA. The ALKBH5 protein was purified and crystallized using the hanging-drop vapour-diffusion method. The crystals diffracted to 2.4 Å resolution using synchrotron radiation. The crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 57.456, b = 83.406, c = 92.909 Å, α = β = γ = 90.00° and one molecule in the asymmetric unit.

Keywords: ALKBH5; N6-methyladenosine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AlkB Homolog 5, RNA Demethylase
  • Chromatography, Gel
  • Crystallization
  • Dioxygenases / chemistry*
  • Dioxygenases / isolation & purification
  • Humans
  • Membrane Proteins / chemistry*
  • Membrane Proteins / isolation & purification
  • X-Ray Diffraction

Substances

  • Membrane Proteins
  • Dioxygenases
  • ALKBH5 protein, human
  • AlkB Homolog 5, RNA Demethylase