A single fluorescent protein-based sensor for in vivo 2-oxogluatarate detection in cell

Biosens Bioelectron. 2014 Apr 15:54:15-9. doi: 10.1016/j.bios.2013.10.038. Epub 2013 Oct 31.

Abstract

2-Oxoglutarate (2OG) is an important currency stands at the crossroad between carbon and nitrogen metabolism. Recent research found that 2OG acts as a signal in the regulation of nitrogen metabolism in prokaryote. While in eukaryotic cells, 2OG is also attractive since tricarboxylic acid cycle (TCA cycle) in tumor cells was found to undergo metabolic alterations such as the Warburg effect. A method of tracing this key metabolite 2OG at the cellular level is highly desirable. In order to visualize and monitor 2-oxoglutarate metabolism in single living cells, we developed a novel sensor by inserting the functional 2OG-binding domain GAF of the NifA protein into YFP. This sensor was found to be highly specific to 2OG. Following binding of 2OG, fluorescence intensity of the sensor increased with increasing 2OG concentration and reached a 1.5-fold maximum fluorescence signal change (F/F0-1), kinetics of fluorescence signal upon 2OG association with sensor was fast, the dynamic response range of the mOGsor sensors was 100 µM-100 mM. Dissociation between sensor and 2OG was verified both in vitro and in vivo. This sensor reported cellular 2OG dynamics in E. coli cells in real time upon different nutrition challenges and manifested the differences in 2OG pool accumulation and consumption rate.

Keywords: 2-Oxoglutarate; Genetically encoded biosensor; In vivo detection; Nitrogen metabolism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biosensing Techniques / methods*
  • Escherichia coli / chemistry
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Ketoglutaric Acids / analysis*
  • Ketoglutaric Acids / metabolism
  • Luminescent Proteins / genetics
  • Luminescent Proteins / metabolism
  • Models, Molecular
  • Nitrogen / metabolism
  • Protein Binding
  • Spectrometry, Fluorescence / methods*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Bacterial Proteins
  • Ketoglutaric Acids
  • Luminescent Proteins
  • NifA protein, Bacteria
  • Transcription Factors
  • yellow fluorescent protein, Bacteria
  • Nitrogen