Direct covalent attachment of DNA microarrays by rapid thiol-ene "click" chemistry

Bioconjug Chem. 2014 Mar 19;25(3):618-27. doi: 10.1021/bc500033d. Epub 2014 Mar 4.

Abstract

A rapid strategy for the covalent immobilization of DNA onto silicon-based materials using the UV-initiated radical thiol-ene reaction is presented in this study. Following this approach, thiol- and alkene-modified oligonucleotide probes were covalently attached in microarray format, reaching immobilization densities around 6 pmol·cm(-2). The developed methodology presents the advantages of spatially controlled probe anchoring (using a photomask), direct attachment without using cross-linkers (one-pot fashion), and short irradiation times (20 min). Using the described strategy, hybridization efficiencies up to 65% with full complementary strands were reached. The approach was evaluated by scoring single-base pair mismatches with discrimination ratios around 15. Moreover, the efficacy of the proposed DNA detection scheme is further demonstrated through the assay on a genomic target of bacterial Escherichia coli.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkenes / chemistry*
  • Click Chemistry
  • DNA / analysis*
  • Escherichia coli / isolation & purification
  • Fluorescence
  • Oligonucleotide Array Sequence Analysis*
  • Oligonucleotide Probes / chemistry*
  • Organosilicon Compounds / chemistry
  • Particle Size
  • Sulfhydryl Compounds / chemistry*
  • Surface Properties
  • Ultraviolet Rays

Substances

  • Alkenes
  • Oligonucleotide Probes
  • Organosilicon Compounds
  • Sulfhydryl Compounds
  • DNA