The role of a template sugar-phosphate backbone in the ribosomal decoding mechanism. Comparative study of poly(U) and poly(dT) template activity

J Mol Biol. 1988 Oct 20;203(4):885-93. doi: 10.1016/0022-2836(88)90114-3.

Abstract

To study the role of a template sugar-phosphate backbone in the ribosomal decoding process, poly(U), poly(dT) and poly(dU)-directed cell-free amino acid incorporation was investigated under the influence of neomycin and high concentrations of Mg2+. The specificity of a factor-dependent translation system of Escherichia coli was shown to change according to the principle: "either ribo- or deoxyribopolynucleotide messenger". Poly(dT) is shown to be effectively translated in the absence of elongation factors, both at low (2 degrees C) and high (37 degrees C) temperature. Neomycin inhibits factor-free poly(dT) translation. Little or no poly(U) translation is observed in this system. A chromatographic analysis of the oligophenylalanine residues synthesized seems to show that translocation is the main step responsible for ribosome specificity to the ribo- or deoxyribopolynucleotide template in both factor-dependent and factor-free translation systems.

MeSH terms

  • Cell-Free System
  • Escherichia coli
  • Kinetics
  • Peptide Biosynthesis
  • Peptides*
  • Poly T / genetics*
  • Poly U / genetics*
  • Polydeoxyribonucleotides / genetics*
  • Protein Biosynthesis*
  • RNA, Bacterial / genetics
  • RNA, Messenger / genetics
  • RNA, Transfer, Amino Acid-Specific / genetics*
  • RNA, Transfer, Phe / genetics*
  • Ribosomes*

Substances

  • Peptides
  • Polydeoxyribonucleotides
  • RNA, Bacterial
  • RNA, Messenger
  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Phe
  • Poly T
  • Poly U
  • polyphenylalanine