Intensity calibration and flat-field correction for fluorescence microscopes

Curr Protoc Cytom. 2014 Apr 1:68:10.14.1-10.14.10. doi: 10.1002/0471142956.cy1014s68.

Abstract

Standardization in fluorescence microscopy involves calibration of intensity in reproducible units and correction for spatial nonuniformity of illumination (flat-field or shading correction). Both goals can be achieved using concentrated solutions of fluorescent dyes. When a drop of a highly concentrated fluorescent dye is placed between a slide and a coverslip it produces a spatially uniform field, resistant to photobleaching and with reproducible quantum yield; it can be used as a brightness standard for wide-field and confocal microscopes. For wide-field microscopes, calibration can be further extended to absolute molecular units. This can be done by imaging a solution of known concentration and known depth; the latter can be prepared by placing a small spherical lens in a diluted solution of the same fluorophore that is used in the biological specimen.

Keywords: Acid Blue 9; Acid Fuschin; Rose Bengal; calibration; confocal microscopy; fluorescence microscopy; shading correction; sodium fluorescein; standardization.

MeSH terms

  • Animals
  • Calibration
  • Fluorescent Dyes / chemistry*
  • Humans
  • Microscopy, Fluorescence / methods
  • Microscopy, Fluorescence / standards

Substances

  • Fluorescent Dyes