Rhizobium lemnae sp. nov., a bacterial endophyte of Lemna aequinoctialis

Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2455-2460. doi: 10.1099/ijs.0.061622-0. Epub 2014 Apr 30.

Abstract

Bacterial strain L6-16(T) was isolated from Lemna aequinoctialis. Cells were Gram-stain-negative, rod-shaped and motile with monopolar flagella. The phylogenetic analysis of its nearly complete 16S rRNA gene sequence revealed that strain L6-16(T) was a member of the genus Rhizobium. Its closest relative was Rhizobium tarimense PL-41(T) with a 16S rRNA gene sequence similarity value of 98.3%. Sequence similarity analysis of the housekeeping recA and atpD genes showed low levels of sequence similarity (<93.9%) between strain L6-16(T) and other species of the genus Rhizobium. Strain L6-16(T) was able to grow between pH 5 and 11 (optimum 7.0) and at temperatures ranging from 20 to 41 °C (optimum 30 °C). It tolerated NaCl up to 1 % (w/v) (optimum 0.5%). C18 : 1ω7c and/or C18 : 1ω6c (summed feature 8; 79.5%) were found as predominant cellular fatty acids. The DNA G+C content of strain L6-16(T) was 58.1 mol% (Tm). Based on low levels of DNA-DNA relatedness, strain L6-16(T) was distinct from members of phylogenetically related species including R. tarimense PL-41(T) (38.3 ± 0.8%), Rhizobium rosettiformans W3(T) (6.9 ± 0.4%) and Rhizobium pseudoryzae J3-A127(T) (12.3 ± 0.6 %). Strain L6-16(T) was unable to nodulate the roots of Phaseolus vulgaris, and nodC and nifH genes were not detected. The results obtained from phylogenetic analyses, phenotypic characterization and DNA-DNA hybridization indicated that strain L6-16(T) represents a novel species of the genus Rhizobium, for which the name Rhizobium lemnae sp. nov. is proposed. The type strain is L6-16(T) ( = NBRC 109339(T) = BCC 55143(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Araceae / microbiology*
  • Base Composition
  • DNA, Bacterial / genetics
  • Endophytes / classification*
  • Endophytes / genetics
  • Endophytes / isolation & purification
  • Fatty Acids / chemistry
  • Genes, Bacterial
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Rhizobium / classification*
  • Rhizobium / genetics
  • Rhizobium / isolation & purification
  • Sequence Analysis, DNA
  • Symbiosis
  • Thailand

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AB738386
  • GENBANK/AB746180
  • GENBANK/AB746183