Automatic multiple sclerosis lesion detection in brain MRI by FLAIR thresholding

Comput Methods Programs Biomed. 2014 Jul;115(3):147-61. doi: 10.1016/j.cmpb.2014.04.006. Epub 2014 Apr 19.

Abstract

Magnetic resonance imaging (MRI) is frequently used to detect and segment multiple sclerosis lesions due to the detailed and rich information provided. We present a modified expectation-maximisation algorithm to segment brain tissues (white matter, grey matter, and cerebro-spinal fluid) as well as a partial volume class containing fluid and grey matter. This algorithm provides an initial segmentation in which lesions are not separated from tissue, thus a second step is needed to find them. This second step involves the thresholding of the FLAIR image, followed by a regionwise refinement to discard false detections. To evaluate the proposal, we used a database with 45 cases comprising 1.5T imaging data from three different hospitals with different scanner machines and with a variable lesion load per case. The results for our database point out to a higher accuracy when compared to two of the best state-of-the-art approaches.

Keywords: Lesion segmentation; MRI; Multiple sclerosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Automation
  • Brain / pathology
  • Brain Mapping / methods*
  • Databases, Factual
  • Humans
  • Image Processing, Computer-Assisted / methods
  • Magnetic Resonance Imaging / methods*
  • Multiple Sclerosis / diagnosis*
  • Multiple Sclerosis / pathology*
  • Normal Distribution
  • Probability
  • Reproducibility of Results
  • Software