Hydrogen ADPs with Cu Kα data? Invariom and Hirshfeld atom modelling of fluconazole

Acta Crystallogr C Struct Chem. 2014 Jun;70(Pt 6):580-3. doi: 10.1107/S2053229614010195. Epub 2014 May 17.

Abstract

For the structure of fluconazole [systematic name: 2-(2,4-difluorophenyl)-1,3-bis(1H-1,2,4-triazol-1-yl)propan-2-ol] monohydrate, C13H12F2N6O·H2O, a case study on different model refinements is reported, based on single-crystal X-ray diffraction data measured at 100 K with Cu Kα radiation to a resolution of sin θ/λ of 0.6 Å(-1). The structure, anisotropic displacement parameters (ADPs) and figures of merit from the independent atom model are compared to `invariom' and `Hirshfeld atom' refinements. Changing from a spherical to an aspherical atom model lowers the figures of merit and improves both the accuracy and the precision of the geometrical parameters. Differences between results from the two aspherical-atom refinements are small. However, a refinement of ADPs for H atoms is only possible with the Hirshfeld atom density model. It gives meaningful results even at a resolution of 0.6 Å(-1), but requires good low-order data.

Keywords: Hirshfeld atom refinement; antifungal drug; crystal structure; fluconazole; hydrogen ADPs; invarioms; pharmaceutical compound.

MeSH terms

  • Copper / chemistry*
  • Crystallography, X-Ray
  • Fluconazole / chemistry*
  • Hydrogen / chemistry*
  • Models, Molecular
  • X-Ray Diffraction

Substances

  • Copper
  • Hydrogen
  • Fluconazole