Enzyme inhibitor discovery by activity-based protein profiling

Annu Rev Biochem. 2014;83:341-77. doi: 10.1146/annurev-biochem-060713-035708.


Eukaryotic and prokaryotic organisms possess huge numbers of uncharacterized enzymes. Selective inhibitors offer powerful probes for assigning functions to enzymes in native biological systems. Here, we discuss how the chemical proteomic platform activity-based protein profiling (ABPP) can be implemented to discover selective and in vivo-active inhibitors for enzymes. We further describe how these inhibitors have been used to delineate the biochemical and cellular functions of enzymes, leading to the discovery of metabolic and signaling pathways that make important contributions to human physiology and disease. These studies demonstrate the value of selective chemical probes as drivers of biological inquiry.

Keywords: activity-based protein profiling; chemical proteomics; enzyme; inhibitor; target engagement.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Binding, Competitive
  • Cell Line, Tumor
  • Chemistry, Pharmaceutical / methods*
  • Drug Design*
  • Drug Discovery
  • Enzyme Inhibitors / chemistry*
  • Enzyme Inhibitors / pharmacology
  • Gene Expression Profiling
  • Humans
  • Lactones / chemistry
  • Phenotype
  • Photochemistry / methods
  • Proteome
  • Proteomics / methods*


  • Enzyme Inhibitors
  • Lactones
  • Proteome