Improving fatty acids production by engineering dynamic pathway regulation and metabolic control

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11299-304. doi: 10.1073/pnas.1406401111. Epub 2014 Jul 21.

Abstract

Global energy demand and environmental concerns have stimulated increasing efforts to produce carbon-neutral fuels directly from renewable resources. Microbially derived aliphatic hydrocarbons, the petroleum-replica fuels, have emerged as promising alternatives to meet this goal. However, engineering metabolic pathways with high productivity and yield requires dynamic redistribution of cellular resources and optimal control of pathway expression. Here we report a genetically encoded metabolic switch that enables dynamic regulation of fatty acids (FA) biosynthesis in Escherichia coli. The engineered strains were able to dynamically compensate the critical enzymes involved in the supply and consumption of malonyl-CoA and efficiently redirect carbon flux toward FA biosynthesis. Implementation of this metabolic control resulted in an oscillatory malonyl-CoA pattern and a balanced metabolism between cell growth and product formation, yielding 15.7- and 2.1-fold improvement in FA titer compared with the wild-type strain and the strain carrying the uncontrolled metabolic pathway. This study provides a new paradigm in metabolic engineering to control and optimize metabolic pathways facilitating the high-yield production of other malonyl-CoA-derived compounds.

Keywords: biofuels; dynamic metabolic control; transcriptional regulation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Biosynthetic Pathways*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / metabolism
  • Fatty Acids / biosynthesis*
  • Gene Expression Regulation, Bacterial
  • Malonyl Coenzyme A / metabolism
  • Metabolic Engineering / methods*
  • Transcription Factors / metabolism

Substances

  • Escherichia coli Proteins
  • FAPR protein, E coli
  • Fatty Acids
  • Transcription Factors
  • Malonyl Coenzyme A