Halobacterium rubrum sp. nov., isolated from a marine solar saltern

Arch Microbiol. 2014 Dec;196(12):847-51. doi: 10.1007/s00203-014-1023-x. Epub 2014 Aug 12.


Halophilic archaeal strain TGN-42-S1(T) was isolated from the Tanggu marine solar saltern, China. Cells from strain TGN-42-S1(T) were observed to be pleomorphic rods, stained Gram-negative, and formed red-pigmented colonies on solid media. Strain TGN-42-S1(T) was found to be able to grow at 20-50 °C (optimum 35-37 °C), at 1.7-4.8 M NaCl (optimum 3.1 M), at 0-1.0 M MgCl2 (optimum 0.1 M), and at pH 5.0-9.0 (optimum pH 7.0-7.5). The cells lysed in distilled water, and the minimal NaCl concentration to prevent cell-lysis was found to be 10 % (w/v). The major polar lipids of the strain were phosphatidic acid, phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol sulfate, galactosyl mannosyl glucosyl diether (TGD-1), sulfated galactosyl mannosyl glucosyl diether (S-TGD-1), sulfated galactosyl mannosyl galactofuranosyl glucosyl diether (S-TeGD), and three unidentified glycolipids which were chromatographically identical to those of the Halobacterium species. The 16S rRNA gene and rpoB' gene of strain TGN-42-S1(T) were phylogenetically related to the corresponding genes of Halobacterium jilantaiense CGMCC 1.5337(T) (98.8 and 93.5 % nucleotide identity, respectively), Halobacterium salinarum CGMCC 1.1958(T) (98.4 and 91.9 %), and Halobacterium noricense JCM 15102(T) (96.9 and 91.1 %). The DNA G + C content of strain TGN-42-S1(T) was determined to be 69.2 mol %. Strain TGN-42-S1(T) showed low DNA-DNA relatedness with Hbt. jilantaiense CGMCC 1.5337(T) and Hbt. salinarum CGMCC 1.1958(T), the most closely related members of the genus Halobacterium. The phenotypic, chemotaxonomic, and phylogenetic properties suggested that strain TGN-42-S1(T) (=CGMCC 1.12575(T) =JCM 19908(T)) represents a new species of Halobacterium, for which the name Halobacterium rubrum sp. nov. is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • China
  • DNA, Archaeal / genetics
  • Glycolipids / analysis
  • Halobacterium / classification*
  • Halobacterium / genetics
  • Halobacterium / isolation & purification*
  • Halobacterium / physiology
  • Hydrogen-Ion Concentration
  • Lipids / analysis
  • Phospholipids / analysis
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Salinity
  • Sodium Chloride*


  • DNA, Archaeal
  • Glycolipids
  • Lipids
  • PGP-Me
  • Phospholipids
  • RNA, Ribosomal, 16S
  • S-TGD-1
  • Sodium Chloride