Link prediction in a MeSH co-occurrence network: preliminary results

Stud Health Technol Inform. 2014:205:579-83.

Abstract

Literature-based discovery (LBD) refers to automatic discovery of implicit relations from the scientific literature. Co-occurrence associations between biomedical concepts are commonly used in LBD. These co-occurrences can be represented as a network that consists of a set of nodes representing concepts and a set of edges representing their relationships (or links). In this paper we propose and evaluate a methodology for link prediction of implicit connections in a network of co-occurring Medical Subject Headings (MeSH®). The proposed approach is complementary to, and may augment, existing LBD methods. Link prediction was performed using Jaccard and Adamic-Adar similarity measures. The preliminary results showed high prediction performance, with area under the ROC curve of 0.78 and 0.82 for the two similarity measures, respectively.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Artificial Intelligence*
  • MEDLINE*
  • Medical Subject Headings*
  • Natural Language Processing*
  • Pattern Recognition, Automated / methods*
  • Periodicals as Topic*
  • Pilot Projects
  • Semantics
  • Terminology as Topic*