[NiFe]-hydrogenase maturation in vitro: analysis of the roles of the HybG and HypD accessory proteins1

Biochem J. 2014 Dec 1;464(2):169-77. doi: 10.1042/BJ20140485.

Abstract

[NiFe]-hydrogenases (Hyd) bind a nickel-iron-based cofactor. The Fe ion of the cofactor is bound by two cyanide ligands and a single carbon monoxide ligand. Minimally six accessory proteins (HypA-HypF) are necessary for NiFe(CN)2CO cofactor biosynthesis in Escherichia coli. It has been shown that the anaerobically purified HypC-HypD-HypE scaffold complex carries the Fe(CN)2CO moiety of this cofactor. In the present study, we have purified the HybG-HypDE complex and used it to successfully reconstitute in vitro active Hyd from E. coli. HybG is a homologue of HypC that is specifically required for the maturation of Hyd-2 and also functions in the maturation of Hyd-1 of E. coli. Maturation of active Hyd-1 and Hyd-2 could be demonstrated in extracts derived from HybG- and HypD-deficient E. coli strains by adding anaerobically purified HybG-HypDE complex. In vitro maturation was dependent on ATP, carbamoylphosphate, nickel and reducing conditions. Hydrogenase maturation was prevented when the purified HybG-HypDE complex used in the maturation assay lacked a bound Fe(CN)2CO moiety. These findings demonstrate that it is possible to isolate incompletely processed intermediates on the maturation pathway and to use these to activate apo-forms of [NiFe]-hydrogenase large subunits.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carbon Monoxide / chemistry*
  • Carbon Monoxide / metabolism
  • Coenzymes / biosynthesis
  • Coenzymes / chemistry
  • Cyanides / chemistry
  • Cyanides / metabolism
  • Endopeptidases / chemistry
  • Endopeptidases / metabolism*
  • Escherichia coli / enzymology*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / metabolism
  • Hydrogenase / chemistry
  • Hydrogenase / metabolism*
  • Iron / chemistry
  • Ligands
  • Molecular Chaperones / chemistry
  • Molecular Chaperones / metabolism
  • Multiprotein Complexes / chemistry
  • Multiprotein Complexes / isolation & purification
  • Nickel / chemistry

Substances

  • Coenzymes
  • Cyanides
  • Escherichia coli Proteins
  • HybG protein, E coli
  • HypC protein, E coli
  • Ligands
  • Molecular Chaperones
  • Multiprotein Complexes
  • Nickel
  • Carbon Monoxide
  • Iron
  • nickel-iron hydrogenase
  • Hydrogenase
  • Endopeptidases
  • hydrogenase maturating endopeptidase HYBD