Regulation of tissue-specific alternative splicing: exon-specific cis-elements govern the splicing of leukocyte common antigen pre-mRNA

EMBO J. 1989 Mar;8(3):787-96.


Tissue-specific alternative splicing is an important mechanism for controlling gene expression. Exons 4, 5 and 6 of the human leukocyte common antigen (LCA) gene are included in B cell mRNA but excluded from thymocyte mRNA by differential splicing. In order to study this tissue-specific alternative splicing, we constructed mini-genes that contain only a few of the LCA exons and the SV40 promoter. Mouse B cells and thymocytes were transfected with these mini-gene constructs and the structures of mRNAs were determined by primer extension analysis. The results show that the same primary transcript is spliced alternatively in B cells and thymocytes. This finding suggests that there is a tissue-specific trans-acting factor that regulates the alternative splicing of LCA pre-mRNA. By making various deletion mutants, cis-elements necessary for tissue-specific splicing were confined within the alternatively spliced exons and their immediate flanking intron sequences. Furthermore, linker scanning analysis shows that there are at least three distinct cis-elements within the LCA exon 4 sequence that are required for tissue-specific alternative splicing. Possible mechanisms of LCA alternative splicing are discussed.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Antigens, Differentiation / genetics*
  • B-Lymphocytes / immunology
  • B-Lymphocytes / metabolism
  • Base Sequence
  • Exons
  • Gene Expression Regulation
  • Histocompatibility Antigens / genetics*
  • Humans
  • Leukocyte Common Antigens
  • Molecular Sequence Data
  • RNA Precursors / genetics*
  • RNA Splicing*
  • T-Lymphocytes / immunology
  • T-Lymphocytes / metabolism
  • Tissue Distribution
  • Transcription Factors / genetics
  • Transcription Factors / metabolism


  • Antigens, Differentiation
  • Histocompatibility Antigens
  • RNA Precursors
  • Transcription Factors
  • Leukocyte Common Antigens