Haplotype analysis of association of the MYOC gene with primary angle-closure glaucoma in a Han Chinese population

Genet Test Mol Biomarkers. 2015 Jan;19(1):3-8. doi: 10.1089/gtmb.2014.0130.

Abstract

Purpose: The aim of this study is to examine whether or not myocilin (MYOC) genetic variations are associated with susceptibility to primary angle-closure glaucoma (PACG) in the Han Chinese population.

Methods: Four single-nucleotide polymorphisms (SNPs)-rs235913, rs183532, rs12076134, and rs235875-in the MYOC gene were genotyped in 212 adult patients with PACG and 255 age-, sex-, and ethnic-matched healthy controls by using a polymerase chain reaction-restriction fragment length polymorphism assay. Data were analyzed by chi-square analysis.

Results: The four SNPs in the MYOC gene were in the Hardy-Weinberg equilibrium in all the subjects. The frequencies of A allele rs183532 were significantly different between the PACG patients and the controls (0.238 vs. 0.169, p=0.008; OR=1.541; 95% CI: 1.117-2.127). The frequencies of the AA genotype and A allele of rs235913 were increased in PACG patients compared with controls, but the difference was not significant (p=0.037, p=0.017, respectively). A comparison of the distributions of the genotypes and alleles of rs12076134 and rs235875 showed no statistically significant differences between the PACG patients and the controls (p>0.05). Haplotype analysis indicated that the frequency of the AATG and AATA haplotypes was significantly higher for PACG patients than for control subjects (both p<0.001). However, the frequency of CGGA and CGTG haplotypes was lower for PACG patients than for control subjects (p<0.001).

Conclusions: Our study suggests that rs183532 is associated with an increased risk of PACG in the Chinese Han population.

MeSH terms

  • Adult
  • Alleles*
  • Asian People / ethnology
  • China / ethnology
  • Cytoskeletal Proteins / genetics*
  • Eye Proteins / genetics*
  • Female
  • Glaucoma, Angle-Closure / ethnology
  • Glaucoma, Angle-Closure / genetics*
  • Glycoproteins / genetics*
  • Haplotypes*
  • Humans
  • Middle Aged
  • Myocilin
  • Polymorphism, Single Nucleotide*

Substances

  • Cytoskeletal Proteins
  • Eye Proteins
  • Glycoproteins
  • Myocilin