Successful validation of genomic biomarkers for human immunotoxicity in Jurkat T cells in vitro

J Appl Toxicol. 2015 Jul;35(7):831-41. doi: 10.1002/jat.3079. Epub 2014 Nov 25.

Abstract

Previously, we identified 25 classifier genes that were able to assess immunotoxicity using human Jurkat T cells. The present study aimed to validate these classifiers. For that purpose, Jurkat cells were exposed for 6 h to subcytotoxic doses of nine immunotoxicants, five non-immunotoxicants and four compounds for which human immunotoxicity has not yet been fully established. RNA was isolated and subjected to Fluidigm quantitative real time (qRT)-PCR analysis. The sensitivity, specificity and accuracy of the screening assay as based on the nine immunotoxicants and five non-immunotoxicants used in this study were 100%, 80% and 93%, respectively, which is better than the performance in our previous study. Only one compound was classified as false positive (benzo-e-pyrene). Of the four potential (non-)immunotoxicants, chlorantraniliprole and Hidrasec were classified immunotoxic and Sunset yellow and imidacloprid as non-immunotoxic. ToxPi analysis of the PCR data provided insight in the molecular pathways that were affected by the compounds. The immunotoxicants 2,3-dichloro-propanol and cypermethrin, although structurally different, affected protein metabolism and cholesterol biosynthesis and transport. In addition, four compounds, i.e. chlorpyrifos, aldicarb, benzo-e-pyrene and anti-CD3, affected genes in cholesterol metabolism and transport, protein metabolism and transcription regulation. qRT-PCR on eight additional genes coding for similar processes as defined in ToxPi analyzes, supported these results. In conclusion, the 25 immunotoxic classifiers performed very well in a screening with new non-immunotoxic and immunotoxic compounds. Therefore, the Jurkat screening assay has great promise to be applied within a tiered approach for animal free testing of human immunotoxicity.

Keywords: Fluidigm; Jurkat; ToxPi; biomarker; classifier; genomic; high throughput; immunotoxicity; prediction; qRT-PCR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldicarb / pharmacology
  • Aldicarb / toxicity
  • Azo Compounds / pharmacology
  • Azo Compounds / toxicity
  • Benzopyrenes / pharmacology
  • Benzopyrenes / toxicity
  • Biomarkers, Pharmacological
  • Chlorohydrins / pharmacology
  • Chlorohydrins / toxicity
  • Chlorpyrifos / pharmacology
  • Chlorpyrifos / toxicity
  • Genetic Markers / drug effects*
  • Humans
  • Imidazoles / pharmacology
  • Imidazoles / toxicity
  • Immunotoxins / pharmacology*
  • In Vitro Techniques
  • Jurkat Cells / drug effects*
  • Neonicotinoids
  • Nitro Compounds / pharmacology
  • Nitro Compounds / toxicity
  • Pyrethrins / pharmacology
  • Pyrethrins / toxicity
  • Real-Time Polymerase Chain Reaction
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Toxicity Tests
  • ortho-Aminobenzoates / pharmacology
  • ortho-Aminobenzoates / toxicity

Substances

  • Azo Compounds
  • Benzopyrenes
  • Biomarkers, Pharmacological
  • Chlorohydrins
  • Genetic Markers
  • Imidazoles
  • Immunotoxins
  • Neonicotinoids
  • Nitro Compounds
  • Pyrethrins
  • ortho-Aminobenzoates
  • cypermethrin
  • imidacloprid
  • chlorantranilipole
  • benzo(e)pyrene
  • 2,3-dichloro-1-propanol
  • Aldicarb
  • 6-hydroxy-5-((p- sulfophenyl)azo)-2-naphthalenesulfonic acid disodium salt
  • Chlorpyrifos