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, 31 (8), 1296-7

GSDS 2.0: An Upgraded Gene Feature Visualization Server

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GSDS 2.0: An Upgraded Gene Feature Visualization Server

Bo Hu et al. Bioinformatics.

Abstract

: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.

Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.

Contact: gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn

Supplementary information: Supplementary data are available at Bioinformatics online.

Figures

Fig. 1.
Fig. 1.
The work flow of GSDS 2.0 (A) and the generated figure (B). A user-specified phylogenetic tree (B1) could be added to the main canvas (B2). Meanwhile, the users can adjust the size, shape and color of all features (B3), rescale introns (B4), as well as edit generated figure interactively (B5)

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References

    1. Benson D.A., et al. . (2013) GenBank. Nucleic Acids Res. , 41, D36–42. - PMC - PubMed
    1. Fawal N., et al. . (2012) GECA: a fast tool for gene evolution and conservation analysis in eukaryotic protein families. Bioinformatics , 28, 1398–1399. - PubMed
    1. Frech C., et al. (2012) FeatureStack: perl module for comparative visualization of gene features. Bioinformatics , 28, 3137–3138. - PubMed
    1. Guo A.Y., et al. . (2007) GSDS: a gene structure display server. Yi Chuan , 29, 1023–1026. - PubMed
    1. Hammesfahr B., et al. . (2013) GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures. BMC Bioinformatics , 14, 77. - PMC - PubMed

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