Free-energy landscape of ion-channel voltage-sensor-domain activation

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):124-9. doi: 10.1073/pnas.1416959112. Epub 2014 Dec 22.


Voltage sensor domains (VSDs) are membrane-bound protein modules that confer voltage sensitivity to membrane proteins. VSDs sense changes in the transmembrane voltage and convert the electrical signal into a conformational change called activation. Activation involves a reorganization of the membrane protein charges that is detected experimentally as transient currents. These so-called gating currents have been investigated extensively within the theoretical framework of so-called discrete-state Markov models (DMMs), whereby activation is conceptualized as a series of transitions across a discrete set of states. Historically, the interpretation of DMM transition rates in terms of transition state theory has been instrumental in shaping our view of the activation process, whose free-energy profile is currently envisioned as composed of a few local minima separated by steep barriers. Here we use atomistic level modeling and well-tempered metadynamics to calculate the configurational free energy along a single transition from first principles. We show that this transition is intrinsically multidimensional and described by a rough free-energy landscape. Remarkably, a coarse-grained description of the system, based on the use of the gating charge as reaction coordinate, reveals a smooth profile with a single barrier, consistent with phenomenological models. Our results bridge the gap between microscopic and macroscopic descriptions of activation dynamics and show that choosing the gating charge as reaction coordinate masks the topological complexity of the network of microstates participating in the transition. Importantly, full characterization of the latter is a prerequisite to rationalize modulation of this process by lipids, toxins, drugs, and genetic mutations.

Keywords: Kv1.2; electrophysiology; gating kinetics; metadynamics; voltage-gated ion channels.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ion Channel Gating*
  • Kv1.2 Potassium Channel / chemistry*
  • Kv1.2 Potassium Channel / metabolism
  • Models, Biological
  • Models, Molecular
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Thermodynamics


  • Kv1.2 Potassium Channel