Three-dimensional structure of a variant `Termamyl-like' Geobacillus stearothermophilus α-amylase at 1.9 Å resolution

Acta Crystallogr F Struct Biol Commun. 2015 Jan 1;71(Pt 1):66-70. doi: 10.1107/S2053230X14026508. Epub 2015 Jan 1.

Abstract

The enzyme-catalysed degradation of starch is central to many industrial processes, including sugar manufacture and first-generation biofuels. Classical biotechnological platforms involve steam explosion of starch followed by the action of endo-acting glycoside hydrolases termed α-amylases and then exo-acting α-glucosidases (glucoamylases) to yield glucose, which is subsequently processed. A key enzymatic player in this pipeline is the `Termamyl' class of bacterial α-amylases and designed/evolved variants thereof. Here, the three-dimensional structure of one such Termamyl α-amylase variant based upon the parent Geobacillus stearothermophilus α-amylase is presented. The structure has been solved at 1.9 Å resolution, revealing the classical three-domain fold stabilized by Ca2+ and a Ca2+-Na+-Ca2+ triad. As expected, the structure is similar to the G. stearothermophilus α-amylase but with main-chain deviations of up to 3 Å in some regions, reflecting both the mutations and differing crystal-packing environments.

Keywords: Geobacillus stearothermophilus; Termamyl; amylase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Catalytic Domain
  • Crystallography, X-Ray
  • Geobacillus stearothermophilus / enzymology*
  • Hydrogen Bonding
  • Models, Molecular
  • Protein Structure, Secondary
  • Structural Homology, Protein
  • alpha-Amylases / chemistry*

Substances

  • Bacterial Proteins
  • alpha-Amylases
  • termamyl

Associated data

  • PDB/4UZU