Structure of Pigment Yellow 181 dimethylsulfoxide N-methyl-2-pyrrolidone (1:1:1) solvate from XRPD + DFT-D

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2015 Feb;71(Pt 1):89-94. doi: 10.1107/S2052520615000724. Epub 2015 Feb 1.

Abstract

With only a 2.6 Å resolution laboratory powder diffraction pattern of the θ phase of Pigment Yellow 181 (P.Y. 181) available, crystal-structure solution and Rietveld refinement proved challenging; especially when the crystal structure was shown to be a triclinic dimethylsulfoxide N-methyl-2-pyrrolidone (1:1:1) solvate. The crystal structure, which in principle has 28 possible degrees of freedom, was determined in three stages by a combination of simulated annealing, partial Rietveld refinement with dummy atoms replacing the solvent molecules and further simulated annealing. The θ phase not being of commercial interest, additional experiments were not economically feasible and additional dispersion-corrected density functional theory (DFT-D) calculations were employed to confirm the correctness of the crystal structure. After the correctness of the structure had been ascertained, the bond lengths and valence angles from the DFT-D minimized crystal structure were fed back into the Rietveld refinement as geometrical restraints (`polymorph-dependent restraints') to further improve the details of the crystal structure; the positions of the H atoms were also taken from the DFT-D calculations. The final crystal structure is a layered structure with an elaborate network of hydrogen bonds.

Keywords: Pigment Yellow 181; X-ray powder diffraction; dispersion-corrected density functional theory.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Benzamides / chemistry*
  • Coloring Agents / chemistry*
  • Crystallography, X-Ray
  • Dimethyl Sulfoxide / chemistry
  • Hydrazones / chemistry*
  • Models, Molecular
  • Molecular Conformation
  • Molecular Structure
  • Powder Diffraction
  • Pyrrolidinones / chemistry
  • Quantum Theory
  • Solvents
  • X-Ray Diffraction

Substances

  • Benzamides
  • Coloring Agents
  • Hydrazones
  • Pyrrolidinones
  • Solvents
  • pigment yellow 181
  • N-methylpyrrolidone
  • Dimethyl Sulfoxide