KRAS mutation screening by chip-based DNA hybridization--a further step towards personalized oncology

Analyst. 2015 Apr 21;140(8):2747-54. doi: 10.1039/c4an02086c. Epub 2015 Feb 23.

Abstract

The use of predictive biomarkers can help to improve therapeutic options for the individual cancer patient. For the treatment of colon cancer patients with anti-EGFR-based drugs, the KRAS mutation status has to be determined to pre-select responders that will benefit from this medication. Amongst others, array-based tests have been established for profiling of the KRAS mutation status. Within this article we describe an on-chip hybridization technique to screen therapeutic relevant KRAS codon 12 mutations. The DNA chip-based platform enables the reliable discrimination of selected mutations by allele-specific hybridization. Here, silver deposits represent robust endpoint signals that allow for a simple naked eye rating. With the here presented assay concept a precise identification of heterozygous and homozygous KRAS mutations, even against a background of up to 95% wild-type DNA, was realizable. The applicability of the test was successfully proven for various cancer cell lines as well as clinical tumour samples. Thus, the chip-based DNA hybridization technique seems to be a promising tool for KRAS mutation analysis to further improve personalized cancer treatment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cell Line, Tumor
  • Codon / genetics
  • DNA / chemistry*
  • DNA / genetics*
  • Humans
  • Microfluidic Analytical Techniques / methods*
  • Mutation*
  • Neoplasms / genetics*
  • Nucleic Acid Hybridization
  • Polymorphism, Single Nucleotide
  • Precision Medicine*
  • Proto-Oncogene Proteins p21(ras) / genetics*
  • Silver / chemistry

Substances

  • Codon
  • KRAS protein, human
  • Silver
  • DNA
  • Proto-Oncogene Proteins p21(ras)