Structure-guided design and optimization of dipeptidyl inhibitors of norovirus 3CL protease. Structure-activity relationships and biochemical, X-ray crystallographic, cell-based, and in vivo studies

J Med Chem. 2015 Apr 9;58(7):3144-55. doi: 10.1021/jm5019934. Epub 2015 Mar 19.

Abstract

Norovirus infection constitutes the primary cause of acute viral gastroenteritis. There are currently no vaccines or norovirus-specific antiviral therapeutics available for the management of norovirus infection. Norovirus 3C-like protease is essential for viral replication, consequently, inhibition of this enzyme is a fruitful avenue of investigation that may lead to the emergence of antinorovirus therapeutics. We describe herein the optimization of dipeptidyl inhibitors of norovirus 3C-like protease using iterative SAR, X-ray crystallographic, and enzyme and cell-based studies. We also demonstrate herein in vivo efficacy of an inhibitor using the murine model of norovirus infection.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology
  • Cell Line / drug effects
  • Chemistry Techniques, Synthetic
  • Coronavirus 3C Proteases
  • Crystallography, X-Ray
  • Cysteine Endopeptidases / chemistry
  • Cysteine Endopeptidases / metabolism
  • Dipeptidyl-Peptidase IV Inhibitors / chemistry
  • Dipeptidyl-Peptidase IV Inhibitors / pharmacology
  • Dose-Response Relationship, Drug
  • Drug Design
  • Female
  • Macrophages / drug effects
  • Macrophages / virology
  • Mice, Inbred BALB C
  • Models, Molecular
  • Norovirus / drug effects
  • Norovirus / enzymology*
  • Norovirus / pathogenicity
  • Peptide Hydrolases / chemistry*
  • Peptide Hydrolases / metabolism
  • Protease Inhibitors / chemistry*
  • Protease Inhibitors / pharmacology*
  • Protein Conformation
  • Structure-Activity Relationship
  • Viral Proteins / antagonists & inhibitors
  • Viral Proteins / chemistry*
  • Viral Proteins / metabolism

Substances

  • Antiviral Agents
  • Dipeptidyl-Peptidase IV Inhibitors
  • Protease Inhibitors
  • Viral Proteins
  • Peptide Hydrolases
  • Cysteine Endopeptidases
  • Coronavirus 3C Proteases

Associated data

  • PDB/4XBB
  • PDB/4XBC
  • PDB/4XBD