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. 2015 Apr 8;10(4):e0122407.
doi: 10.1371/journal.pone.0122407. eCollection 2015.

Phylogenetic molecular species delimitations unravel potential new species in the pest genus Spodoptera Guenée, 1852 (Lepidoptera, Noctuidae)

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Phylogenetic molecular species delimitations unravel potential new species in the pest genus Spodoptera Guenée, 1852 (Lepidoptera, Noctuidae)

Pascaline Dumas et al. PLoS One. .

Abstract

Nowadays molecular species delimitation methods promote the identification of species boundaries within complex taxonomic groups by adopting innovative species concepts and theories (e.g. branching patterns, coalescence). As some of them can efficiently deal with large single-locus datasets, they could speed up the process of species discovery compared to more time consuming molecular methods, and benefit from the existence of large public datasets; these methods can also particularly favour scientific research and actions dealing with threatened or economically important taxa. In this study we aim to investigate and clarify the status of economically important moths species belonging to the genus Spodoptera (Lepidoptera, Noctuidae), a complex group in which previous phylogenetic analyses and integrative approaches already suggested the possible occurrence of cryptic species and taxonomic ambiguities. In this work, the effectiveness of innovative (and faster) species delimitation approaches to infer putative species boundaries has been successfully tested in Spodoptera, by processing the most comprehensive dataset (in terms of number of species and specimens) ever achieved; results are congruent and reliable, irrespective of the set of parameters and phylogenetic models applied. Our analyses confirm the existence of three potential new species clusters (for S. exigua (Hübner, 1808), S. frugiperda (J.E. Smith, 1797) and S. mauritia (Boisduval, 1833)) and support the synonymy of S. marima (Schaus, 1904) with S. ornithogalli (Guenée, 1852). They also highlight the ambiguity of the status of S. cosmiodes (Walker, 1858) and S. descoinsi Lalanne-Cassou & Silvain, 1994. This case study highlights the interest of molecular species delimitation methods as valuable tools for species discovery and to emphasize taxonomic ambiguities.

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Conflict of interest statement

Competing Interests: The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. COI-based phylogenetic relationships of Spodoptera species.
The tree on the left summarizes the results of ML analyses while the tree on the right summarizes the results of BI analyses. Black dots indicate nodes supported by bootstrap values ≥ 70% (ML tree) or supported by posterior probability ≥ 0.95 (BI tree).
Fig 2
Fig 2. Putative species clusters corresponding to: (i) morphological delineations (column 1); (ii) PTP analyses using either the majority-rule consensus topology resulting from the BI analyses (column 2) or the best tree from the ML analyses (column 3); (iii) GMYC analyses based either on a strict clock and a BD model (column 4) or on a UCLN clock and a BD model (column 5).
The reference tree used here corresponds to the tree resulting from the BI analyses carried out with MrBayes.

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References

    1. Wilson EO (2004) Taxonomy as a fundamental discipline. Philos Trans R Soc Lond B Biol Sci 359: 739–739. 10.1098/rstb.2003.1440 - DOI - PMC - PubMed
    1. Joppa LN, Roberts DL, Myers N, Pimm SL (2011) Biodiversity hotspots house most undiscovered plant species. Proc Natl Acad Sci USA 108: 13171–13176. 10.1073/pnas.1109389108 - DOI - PMC - PubMed
    1. Mora C, Tittensor D, Adl S, Simpson A, Worm B (2011) How many species are there on Earth and in the ocean? PLoS Biol 9 10.1371/journal.pbio.1001127 - DOI - PMC - PubMed
    1. Scheffers BR, Joppa LN, Pimm SL, Laurance WF (2012) What we know and don’t know about Earth’s missing biodiversity. Trends Ecol Evol 27: 501–510. 10.1016/j.tree.2012.05.008 - DOI - PubMed
    1. Godfray HCJ (2002) Challenges for taxonomy. Nature 417: 17–19. 10.1038/417017a - DOI - PubMed

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Grants and funding

Part of the sequencing was supported by a Genoscope project @-Speed-Id (Accurate SPEciEs Delimitation and Identification of eukaryotic biodiversity using DNA markers) proposed by F-BoL, the French Barcode of life initiative and by the program ‘Bibliothèque du Vivant’ (Project SPODOBAR) supported by a joint "Centre national de la recherche scientifique", "Institut National de la Recherche Agronomique" and "Muséum national d'Histoire naturelle" consortium. The project was also supported by INRA (AAP SPE SPODOPTERA) and a grant from the French National Research Agency (ANR-12-BSV7-0004-01 ADA-SPODO).