The complete chloroplast genome sequence of Anoectochilus roxburghii

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2477-8. doi: 10.3109/19401736.2015.1033706. Epub 2015 Apr 13.

Abstract

The complete chloroplast sequence of the Anoectochilus roxburghii, a popular traditional Chinese medicine for the treatment of cancer, was determined in this study. The chloroplast genome (cpDNA)^ was 152,802 bp in length, containing a pair of inverted repeats of 52,728 bp separated by a large single-copy region and a small single-copy region of 82,641 bp and 17,433 bp, respectively. The chloroplast genome encodes 116 predicted functional genes, including 81 protein-coding genes, four ribosomal RNA genes, and 31 transfer RNA genes, 25 of which are duplicated in the inverted repeat regions. The cpDNA is GC-rich (36.9%).

Keywords: Anoectochilus roxburghii; chloroplast genome; orchid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • Computational Biology
  • Genes, Chloroplast
  • Genome Size
  • Genome, Chloroplast*
  • Open Reading Frames
  • Orchidaceae / classification*
  • Orchidaceae / genetics*
  • Phylogeny
  • Sequence Analysis, DNA
  • Whole Genome Sequencing