Retention of duplicated ITAM-containing transmembrane signaling subunits in the tetraploid amphibian species Xenopus laevis

Dev Comp Immunol. 2015 Nov;53(1):158-68. doi: 10.1016/j.dci.2015.07.002. Epub 2015 Jul 11.

Abstract

The ITAM-bearing transmembrane signaling subunits (TSS) are indispensable components of activating leukocyte receptor complexes. The TSS-encoding genes map to paralogous chromosomal regions, which are thought to arise from ancient genome tetraploidization(s). To assess a possible role of tetraploidization in the TSS evolution, we studied TSS and other functionally linked genes in the amphibian species Xenopus laevis whose genome was duplicated about 40 MYR ago. We found that X. laevis has retained a duplicated set of sixteen TSS genes, all except one being transcribed. Furthermore, duplicated TCRα loci and genes encoding TSS-coupling protein kinases have also been retained. No clear evidence for functional divergence of the TSS paralogs was obtained from gene expression and sequence analyses. We suggest that the main factor of maintenance of duplicated TSS genes in X. laevis was a protein dosage effect and that this effect might have facilitated the TSS set expansion in early vertebrates.

Keywords: Activating receptor complexes; Genome mining; Immunogenetics; Protein dosage effect; TCR; Tetraploidization; Xenopus.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cell Line
  • Evolution, Molecular
  • HEK293 Cells
  • Humans
  • Immunoreceptor Tyrosine-Based Activation Motif / genetics*
  • Molecular Sequence Data
  • Receptors, Antigen, T-Cell, alpha-beta / genetics*
  • Receptors, Antigen, T-Cell, alpha-beta / immunology
  • Receptors, IgG / genetics*
  • Receptors, IgG / immunology
  • Sequence Alignment
  • Signal Transduction / genetics
  • Signal Transduction / immunology*
  • Tetraploidy*
  • Xenopus laevis

Substances

  • Receptors, Antigen, T-Cell, alpha-beta
  • Receptors, IgG