The miRNA miR-34a enhances HIV-1 replication by targeting PNUTS/PPP1R10, which negatively regulates HIV-1 transcriptional complex formation

Biochem J. 2015 Sep 15;470(3):293-302. doi: 10.1042/BJ20150700. Epub 2015 Jul 17.

Abstract

HIV-1 relies heavily on the host cellular machinery for its replication. During infection, HIV-1 is known to modulate the host-cell miRNA profile. One of the miRNAs, miR-34a, is up-regulated by HIV-1 in T-cells as suggested by miRNA microarray studies. However, the functional consequences and the mechanism behind this phenomenon were not explored. The present study shows that HIV-1 enhances miR-34a in a time-dependent manner in T-cells. Our overexpression and knockdown-based experimental results suggest that miR-34a promotes HIV-1 replication in T-cells. Hence, there is a positive feedback loop between miR-34a and HIV-1 replication. We show that the mechanism of action of miR-34a in HIV-1 replication involves a cellular protein, the phosphatase 1 nuclear-targeting subunit (PNUTS). PNUTS expression levels decrease with the progression of HIV-1 infection in T-cells. Also, the overexpression of PNUTS potently inhibits HIV-1 replication in a dose-dependent manner. We report for the first time that PNUTS negatively regulates HIV-1 transcription by inhibiting the assembly of core components of the transcription elongation factor P-TEFb, i.e. cyclin T1 and CDK9. Thus, HIV-1 increases miR-34a expression in cells to overcome the inhibitory effect of PNUTS on HIV-1 transcription. So, the present study provides new mechanistic details with regard to our understanding of a complex interplay between miR-34a and the HIV-1 transcription machinery involving PNUTS.

Keywords: CDK9; HIV; PNUTS; cyclin T1; miR-34a; p24.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cyclin T / metabolism
  • Cyclin-Dependent Kinase 9 / metabolism
  • DNA-Binding Proteins / antagonists & inhibitors
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism*
  • Gene Knockdown Techniques
  • HEK293 Cells
  • HIV-1 / genetics*
  • HIV-1 / physiology*
  • HeLa Cells
  • Host-Pathogen Interactions / genetics
  • Host-Pathogen Interactions / physiology
  • Humans
  • MicroRNAs / antagonists & inhibitors
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism*
  • Models, Biological
  • Nuclear Proteins / antagonists & inhibitors
  • Nuclear Proteins / genetics*
  • Nuclear Proteins / metabolism*
  • RNA-Binding Proteins / antagonists & inhibitors
  • RNA-Binding Proteins / genetics*
  • RNA-Binding Proteins / metabolism*
  • T-Lymphocytes / metabolism
  • T-Lymphocytes / virology
  • Transcription, Genetic
  • Up-Regulation
  • Virus Replication / genetics*
  • Virus Replication / physiology*

Substances

  • CCNT1 protein, human
  • Cyclin T
  • DNA-Binding Proteins
  • MIRN34 microRNA, human
  • MicroRNAs
  • Nuclear Proteins
  • PPP1R10 protein, human
  • RNA-Binding Proteins
  • CDK9 protein, human
  • Cyclin-Dependent Kinase 9