Genome-wide association QTL mapping for teat number in a purebred population of Duroc pigs

Anim Genet. 2015 Oct;46(5):571-5. doi: 10.1111/age.12331. Epub 2015 Jul 22.

Abstract

Because of increasing litter size in Western pig breeds, additional teats are desirable to increase the capacity for nursing offspring. We applied genome-wide SNP markers to detect QTL regions that affect teat number in a Duroc population. We phenotyped 1024 animals for total teat number. A total of 36 588 SNPs on autosomes were used in the analysis. The estimated heritability for teat number was 0.34 ± 0.05 on the basis of a genomic relationship matrix constructed from all SNP markers. Using a BayesC method, we identified a total of 18 QTL regions that affected teat number in Duroc pigs; 9 of the 18 regions were newly detected.

Keywords: Bayesian method; genome-wide association study; swine.

MeSH terms

  • Animals
  • Bayes Theorem
  • Breeding
  • Chromosome Mapping
  • Female
  • Genetic Markers
  • Genome-Wide Association Study*
  • Litter Size
  • Mammary Glands, Animal*
  • Phenotype
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci*
  • Sus scrofa / classification
  • Sus scrofa / genetics*

Substances

  • Genetic Markers