Complete genome sequence of novel carbon monoxide oxidizing bacteria Citrobacter amalonaticus Y19, assembled de novo

Satish Kumar Ainala; Eunhee Seol; Sunghoon Park

doi:10.1016/j.jbiotec.2015.07.012

Complete genome sequence of novel carbon monoxide oxidizing bacteria Citrobacter amalonaticus Y19, assembled de novo

J Biotechnol. 2015 Oct 10;211:79-80. doi: 10.1016/j.jbiotec.2015.07.012. Epub 2015 Jul 22.

Authors

Satish Kumar Ainala¹, Eunhee Seol¹, Sunghoon Park²

Affiliations

¹ School of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangjeon-dong, Geumjeong-gu, Busan 609-735, South Korea.
² School of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangjeon-dong, Geumjeong-gu, Busan 609-735, South Korea. Electronic address: parksh@pusan.ac.kr.

PMID: 26210290
DOI: 10.1016/j.jbiotec.2015.07.012

Abstract

We report here the complete genome sequence of Citrobacter amalonaticus Y19 isolated from an anaerobic digester. PacBio single-molecule real-time (SMRT) sequencing was employed, resulting in a single scaffold of 5.58Mb. The sequence of a mega plasmid of 291Kb size is also presented.

Keywords: CO-Hyd; CODH; PacBio; Water–gas shift reaction.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Base Sequence
Carbon Monoxide / metabolism*
Citrobacter / genetics*
Citrobacter / metabolism*
Genome, Bacterial*
Oxidation-Reduction
Sequence Analysis, DNA

Substances

Carbon Monoxide