Crystallographic studies of aspartate racemase from Lactobacillus sakei NBRC 15893

Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1012-6. doi: 10.1107/S2053230X15010572. Epub 2015 Jul 28.

Abstract

Aspartate racemase catalyzes the interconversion between L-aspartate and D-aspartate and belongs to the PLP-independent racemases. The enzyme from the lactic acid bacterium Lactobacillus sakei NBRC 15893, isolated from kimoto, is considered to be involved in D-aspartate synthesis during the brewing process of Japanese sake at low temperatures. The enzyme was crystallized at 293 K by the sitting-drop vapour-diffusion method using 25%(v/v) PEG MME 550, 5%(v/v) 2-propanol. The crystal belonged to space group P3121, with unit-cell parameters a = b = 104.68, c = 97.29 Å, and diffracted to 2.6 Å resolution. Structure determination is under way.

Keywords: Lactobacillus sakei; aspartate racemase; crystallization; d-amino acid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Isomerases / chemistry*
  • Amino Acid Isomerases / genetics
  • Amino Acid Sequence
  • Aspartic Acid / chemistry*
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Lactobacillus / chemistry*
  • Lactobacillus / enzymology
  • Molecular Sequence Data
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Sequence Alignment

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Aspartic Acid
  • Amino Acid Isomerases
  • aspartate racemase