Translational genomics for plant breeding with the genome sequence explosion

Plant Biotechnol J. 2016 Apr;14(4):1057-69. doi: 10.1111/pbi.12449. Epub 2015 Aug 13.

Abstract

The use of next-generation sequencers and advanced genotyping technologies has propelled the field of plant genomics in model crops and plants and enhanced the discovery of hidden bridges between genotypes and phenotypes. The newly generated reference sequences of unstudied minor plants can be annotated by the knowledge of model plants via translational genomics approaches. Here, we reviewed the strategies of translational genomics and suggested perspectives on the current databases of genomic resources and the database structures of translated information on the new genome. As a draft picture of phenotypic annotation, translational genomics on newly sequenced plants will provide valuable assistance for breeders and researchers who are interested in genetic studies.

Keywords: Ontology-driven database; genome-assisted breeding; genomic resources; high-throughput genotyping; next-generation sequencing; translational genomics.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Chromosome Mapping
  • Crops, Agricultural / genetics*
  • Databases, Genetic
  • Genome, Plant*
  • Genomics / methods*
  • High-Throughput Nucleotide Sequencing / methods
  • Plant Breeding / methods*