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Isolation of a Complete Circular Virus Genome Sequence From an Alaskan Black-Capped Chickadee (Poecile Atricapillus) Gastrointestinal Tract Sample

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Isolation of a Complete Circular Virus Genome Sequence From an Alaskan Black-Capped Chickadee (Poecile Atricapillus) Gastrointestinal Tract Sample

Zachary R Hanna et al. Genome Announc.

Abstract

We report here the genome sequence of a circular virus isolated from samples of an Alaskan black-capped chickadee (Poecile atricapillus) gastrointestinal tract. The genome is 2,152 bp in length and is most similar (30 to 44.5% amino acid identity) to the genome sequences of other single-stranded DNA (ssDNA) circular viruses belonging to the gemycircularvirus group.

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References

    1. Handel CM, Pajot LM, Matsuoka SM, Hemert CV, Terenzi J, Talbot SL, Mulcahy DM, Meteyer CU, Trust KA. 2010. Epizootic of beak deformities among wild birds in Alaska: an emerging disease in North America? Auk 127:882–898. doi:10.1525/auk.2010.10111. - DOI
    1. Schindler CW, Krolewski JJ, Rush MG. 1982. Selective trapping of circular double-stranded DNA molecules in solidifying agarose. Plasmid 7:263–270. doi:10.1016/0147-619X(82)90007-5. - DOI - PubMed
    1. Acland A, Agarwala R, Barrett T, Beck J, Benson DA, Bollin C, Bolton E, Bryant SH, Canese K, Church DM, Clark K, DiCuccio M, Dondoshansky I, Federhen S, Feolo M, Geer LY, Gorelenkov V, Hoeppner M, Johnson M, Kelly C, Khotomlianski V, Kimchi A, Kimelman M, Kitts P, Krasnov S, Kuznetsov A, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Karsch-Mizrachi I, Murphy T, Ostell J, O’Sullivan C, Panchenko A, Phan L, Pruitt DPKD, Rubinstein W, Sayers EW, Schneider V, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Siyan K, Slotta D, et al. 2014. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 42:D7–D17. - PubMed
    1. Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, Ma N, Madden TL, Matten WT, McGinnis SD, Merezhuk Y, Raytselis Y, Sayers EW, Tao T, Ye J, Zaretskaya I. 2013. BLAST: a more efficient report with usability improvements. Nucleic Acids Res 41:W29–W33. doi:10.1093/nar/gkt282. - DOI - PMC - PubMed
    1. Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL. 2008. NCBI blast: a better Web interface. Nucleic Acids Res 36:W5–W9. doi:10.1093/nar/gkn201. - DOI - PMC - PubMed

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