Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution
- PMID: 26439501
- DOI: 10.1016/j.tig.2015.09.004
Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution
Abstract
Research into chromosome structure and organization is an old field that has seen some fascinating progress in recent years. Modern molecular methods that can describe the shape of chromosomes have begun to revolutionize our understanding of genome organization and the mechanisms that regulate gene activity. A picture is beginning to emerge of chromatin loops representing a widespread organizing principle of the chromatin fiber and the proteins cohesin and CCCTC-binding factor (CTCF) as key players anchoring such chromatin loops. Here we review our current understanding of the features of CTCF- and cohesin-mediated genome organization and how their evolution may have helped to shape genome structure.
Copyright © 2015 Elsevier Ltd. All rights reserved.
Similar articles
-
Genome-wide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions.Genome Res. 2013 Oct;23(10):1624-35. doi: 10.1101/gr.150136.112. Epub 2013 Jun 26. Genome Res. 2013. PMID: 23804403 Free PMC article.
-
Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.Cell Rep. 2015 Mar 3;10(8):1297-309. doi: 10.1016/j.celrep.2015.02.004. Epub 2015 Feb 26. Cell Rep. 2015. PMID: 25732821 Free PMC article.
-
Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation.J Biol Chem. 2012 Sep 7;287(37):30906-13. doi: 10.1074/jbc.R111.324962. Epub 2012 Sep 5. J Biol Chem. 2012. PMID: 22952237 Free PMC article. Review.
-
Cohesin-mediated interactions organize chromosomal domain architecture.EMBO J. 2013 Dec 11;32(24):3119-29. doi: 10.1038/emboj.2013.237. Epub 2013 Nov 1. EMBO J. 2013. PMID: 24185899 Free PMC article.
-
A tour of 3D genome with a focus on CTCF.Semin Cell Dev Biol. 2019 Jun;90:4-11. doi: 10.1016/j.semcdb.2018.07.020. Epub 2018 Jul 23. Semin Cell Dev Biol. 2019. PMID: 30031214 Review.
Cited by
-
Intracellular Regulome Variability Along the Organ of Corti: Evidence, Approaches, Challenges, and Perspective.Front Genet. 2018 May 8;9:156. doi: 10.3389/fgene.2018.00156. eCollection 2018. Front Genet. 2018. PMID: 29868110 Free PMC article. Review.
-
Regulation of the three-dimensional chromatin organization by transposable elements in pig spleen.Comput Struct Biotechnol J. 2023 Sep 25;21:4580-4588. doi: 10.1016/j.csbj.2023.09.029. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37790243 Free PMC article.
-
Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.Trends Genet. 2017 Feb;33(2):143-154. doi: 10.1016/j.tig.2016.12.002. Epub 2017 Jan 10. Trends Genet. 2017. PMID: 28087167 Free PMC article. Review.
-
Chromatin Domains: The Unit of Chromosome Organization.Mol Cell. 2016 Jun 2;62(5):668-80. doi: 10.1016/j.molcel.2016.05.018. Mol Cell. 2016. PMID: 27259200 Free PMC article. Review.
-
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen.Nat Commun. 2024 Feb 24;15(1):1701. doi: 10.1038/s41467-024-45884-x. Nat Commun. 2024. PMID: 38402218 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
