The Dictyostelium gelation factor shares a putative actin binding site with alpha-actinins and dystrophin and also has a rod domain containing six 100-residue motifs that appear to have a cross-beta conformation

J Cell Biol. 1989 Aug;109(2):607-18. doi: 10.1083/jcb.109.2.607.

Abstract

The 120-kD gelation factor and alpha-actinin are among the most abundant F-actin cross-linking proteins in Dictyostelium discoideum. Both molecules are homodimers and have extended rod-like configurations that are respectively approximately 35 and 40 nm long. Here we report the complete cDNA sequence of the 120-kD gelation factor which codes for a protein of 857 amino acids. Its calculated molecular mass is 92.2 kD which is considerably smaller than suggested by its mobility in SDS-PAGE. Analysis of the sequence shows a region that is highly homologous to D. discoideum alpha-actinin, chicken fibroblast alpha-actinin, and human dystrophin. This conserved domain probably represents an actin binding site that is connected to the rod-forming part of the molecule via a highly charged stretch of amino acids. Whereas the sequence of alpha-actinin (Noegel, A., W. Witke, and M. Schleicher. 1987. FEBS [Fed. Eur. Biochem. Soc.] Lett. 221:391-396) suggests that the extended rod domain of the molecule is based on four spectrin-like repeats with high alpha-helix potential, the rod domain of the 120-kD gelation factor is constructed from six 100-residue repeats that have a high content of glycine and proline residues and which, in contrast to alpha-actinin, do not appear to have a high alpha-helical content. These repeats show a distinctive pattern of regions that have high beta-sheet potential alternating with short zones rich in residues with a high potential for turns. This observation suggests that each 100-residue motif has a cross-beta conformation with approximately nine sheets arranged perpendicular to the long axis of the molecule. In the high beta-potential zones every second residue is often hydrophobic. In a cross-beta structure, this pattern would result in one side of the domain having a surface rich in hydrophobic side chains which could account for the dimerization of the 120-kD gelation factor subunits.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinin / analysis*
  • Actinin / metabolism
  • Actins / metabolism*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites
  • Carrier Proteins / analysis*
  • Carrier Proteins / metabolism
  • DNA / analysis
  • DNA / genetics
  • Dictyostelium / analysis*
  • Dystrophin
  • Microfilament Proteins / analysis*
  • Microfilament Proteins / metabolism
  • Molecular Sequence Data
  • Muscle Proteins / analysis*
  • Muscle Proteins / metabolism
  • Protein Conformation

Substances

  • Actins
  • Carrier Proteins
  • Dystrophin
  • Microfilament Proteins
  • Muscle Proteins
  • Actinin
  • abpC protein, Dictyostelium
  • DNA

Associated data

  • GENBANK/X15430