Complete genome of biodegradable plastics-decomposing Roseateles depolymerans KCTC 42856(T) (=61A(T))

J Biotechnol. 2016 Feb 20:220:47-8. doi: 10.1016/j.jbiotec.2016.01.012. Epub 2016 Jan 16.

Abstract

Roseateles depolymerans is a Gram-negative, rod-shaped, flagellated, obligately aerobic, photosynthetic bacterium that was isolated from the Hanamuro River, Ibaraki Prefecture, Japan. Here, we report the complete genome of R. depolymerans KCTC 42856(T) (=61A(T)=DSM 11813(T)=CCUG 48747(T)=NCIMB 13588(T)), which consists of 5,681,722bp (G+C content of 66.57%) with a single chromosome, 4,773 protein-coding genes, 57 tRNAs and 4 rRNA operons. Several genes related to degradation of aliphatic and aromatic polymers were detected in the genome that help explain how the strain mediates decomposition of biodegradable plastics into fragments which are then assimilated and subsequently metabolized by microbial cells.

Keywords: Biodegradable plastics; Complete genome; PacBio sequencing; Roseateles depolymerans.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Base Sequence
  • Biodegradable Plastics
  • Burkholderia / genetics*
  • Burkholderia / isolation & purification
  • Burkholderia / metabolism
  • Chromosome Mapping
  • Chromosomes, Bacterial*
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Fresh Water / microbiology
  • Genome Size
  • Genome, Bacterial*
  • Japan
  • RNA, Bacterial / genetics
  • Water Microbiology

Substances

  • Biodegradable Plastics
  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Bacterial