Supporting read-across using biological data

ALTEX. 2016;33(2):167-82. doi: 10.14573/altex.1601252. Epub 2016 Feb 11.

Abstract

Read-across, i.e. filling toxicological data gaps by relating to similar chemicals, for which test data are available, is usually done based on chemical similarity. Besides structure and physico-chemical properties, however, biological similarity based on biological data adds extra strength to this process. In the context of developing Good Read-Across Practice guidance, a number of case studies were evaluated to demonstrate the use of biological data to enrich read-across. In the simplest case, chemically similar substances also show similar test results in relevant in vitro assays. This is a well-established method for the read-across of e.g. genotoxicity assays. Larger datasets of biological and toxicological properties of hundreds and thousands of substances become increasingly available enabling big data approaches in read-across studies. Several case studies using various big data sources are described in this paper. An example is given for the US EPA's ToxCast dataset allowing read-across for high quality uterotrophic assays for estrogenic endocrine disruption. Similarly, an example for REACH registration data enhancing read-across for acute toxicity studies is given. A different approach is taken using omics data to establish biological similarity: Examples are given for stem cell models in vitro and short-term repeated dose studies in rats in vivo to support read-across and category formation. These preliminary biological data-driven read-across studies highlight the road to the new generation of read-across approaches that can be applied in chemical safety assessment.

Keywords: big data; biological similarity; read-across; safety assessment.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animal Testing Alternatives
  • Animals
  • Biological Assay / methods*
  • Chemical Safety / methods*
  • Data Mining
  • Databases, Factual*
  • Hazardous Substances / chemistry*
  • Hazardous Substances / toxicity*
  • High-Throughput Screening Assays
  • Molecular Structure
  • Rats
  • Structure-Activity Relationship

Substances

  • Hazardous Substances