Effects of Macromolecular Crowding on Alcohol Dehydrogenase Activity Are Substrate-Dependent

Biochemistry. 2016 Jun 28;55(25):3550-8. doi: 10.1021/acs.biochem.6b00257. Epub 2016 Jun 17.

Abstract

Enzymes operate in a densely packed cellular environment that rarely matches the dilute conditions under which they are studied. To better understand the ramifications of this crowding, the Michaelis-Menten kinetics of yeast alcohol dehydrogenase (YADH) were monitored spectrophotometrically in the presence of high concentrations of dextran. Crowding decreased the maximal rate of the reaction by 40% for assays with ethanol, the primary substrate of YADH. This observation was attributed to slowed release of the reduced β-nicotinamide adenine dinucleotide product, which is rate-limiting. In contrast, when larger alcohols were used as the YADH substrate, the rate-limiting step becomes hydride transfer and crowding instead increased the maximal rate of the reaction by 20-40%. This work reveals the importance of considering enzyme mechanism when evaluating the ways in which crowding can alter kinetics.

MeSH terms

  • Alcohol Dehydrogenase / chemistry
  • Alcohol Dehydrogenase / metabolism*
  • Dextrans / metabolism*
  • Diffusion
  • Ethanol / metabolism*
  • Kinetics
  • Macromolecular Substances / metabolism*
  • NAD / metabolism*
  • Oxidation-Reduction
  • Saccharomyces cerevisiae / enzymology*
  • Substrate Specificity
  • Viscosity

Substances

  • Dextrans
  • Macromolecular Substances
  • NAD
  • Ethanol
  • Alcohol Dehydrogenase