Structural Studies of a Lipid-Binding Peptide from Tunicate Hemocytes with Anti-Biofilm Activity

Sci Rep. 2016 Jun 13:6:27128. doi: 10.1038/srep27128.

Abstract

Clavanins is a class of peptides (23aa) histidine-rich, free of post-translational modifications. Clavanins have been studied largely for their ability to disrupt bacterial membranes. In the present study, the interaction of clavanin A with membranes was assessed by dynamic light scattering, zeta potential and permeabilization assays. We observed through those assays that clavanin A lysis bacterial cells at concentrations corresponding to its MIC. Further, the structure and function of clavanin A was investigated. To better understand how clavanin interacted with bacteria, its NMR structure was elucidated. The solution state NMR structure of clavanin A in the presence of TFE-d3 indicated an α-helical conformation. Secondary structures, based on circular dichroism measurements in anionic sodium dodecyl sulfate (SDS) and TFE (2,2,2-trifluorethanol), in silico lipid-peptide docking and molecular simulations with lipids DPPC and DOPC revealed that clavanin A can adopt a variety of folds, possibly influencing its different functions. Microcalorimetry assays revealed that clavanin A was capable of discriminating between different lipids. Finally, clavanin A was found to eradicate bacterial biofilms representing a previously unrecognized function.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacteria / drug effects*
  • Bacterial Physiological Phenomena / drug effects
  • Biofilms / drug effects*
  • Blood Proteins / chemistry*
  • Blood Proteins / pharmacology
  • Cell Membrane / drug effects
  • Circular Dichroism
  • Dynamic Light Scattering
  • Hemocytes / chemistry
  • Hemocytes / metabolism
  • Lipid Bilayers / metabolism*
  • Microbial Sensitivity Tests
  • Molecular Docking Simulation
  • Protein Structure, Secondary
  • Urochordata / chemistry
  • Urochordata / metabolism*

Substances

  • Blood Proteins
  • Lipid Bilayers
  • clavanin A