Molecular insights into RBR E3 ligase ubiquitin transfer mechanisms

EMBO Rep. 2016 Aug;17(8):1221-35. doi: 10.15252/embr.201642641. Epub 2016 Jun 16.

Abstract

RING-in-between-RING (RBR) ubiquitin (Ub) ligases are a distinct class of E3s, defined by a RING1 domain that binds E2 Ub-conjugating enzyme and a RING2 domain that contains an active site cysteine similar to HECT-type E3s. Proposed to function as RING/HECT hybrids, details regarding the Ub transfer mechanism used by RBRs have yet to be defined. When paired with RING-type E3s, E2s perform the final step of Ub ligation to a substrate. In contrast, when paired with RBR E3s, E2s must transfer Ub onto the E3 to generate a E3~Ub intermediate. We show that RBRs utilize two strategies to ensure transfer of Ub from the E2 onto the E3 active site. First, RING1 domains of HHARI and RNF144 promote open E2~Ubs. Second, we identify a Ub-binding site on HHARI RING2 important for its recruitment to RING1-bound E2~Ub. Mutations that ablate Ub binding to HHARI RING2 also decrease RBR ligase activity, consistent with RING2 recruitment being a critical step for the RBR Ub transfer mechanism. Finally, we demonstrate that the mechanism defined here is utilized by a variety of RBRs.

Keywords: HHARI; HOIP; Parkin; RBR; ubiquitin E3 ligase.

MeSH terms

  • Binding Sites
  • Catalytic Domain
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Models, Molecular
  • Polycomb Repressive Complex 1 / chemistry
  • Polycomb Repressive Complex 1 / metabolism
  • Protein Binding
  • Protein Conformation
  • Protein Transport
  • Tumor Suppressor Proteins / chemistry
  • Tumor Suppressor Proteins / metabolism
  • Ubiquitin / chemistry
  • Ubiquitin / metabolism*
  • Ubiquitin Thiolesterase / chemistry
  • Ubiquitin Thiolesterase / metabolism
  • Ubiquitin-Conjugating Enzymes / chemistry
  • Ubiquitin-Conjugating Enzymes / metabolism
  • Ubiquitin-Protein Ligases / chemistry
  • Ubiquitin-Protein Ligases / metabolism*
  • Ubiquitination

Substances

  • BAP1 protein, human
  • Tumor Suppressor Proteins
  • Ubiquitin
  • Ubiquitin-Conjugating Enzymes
  • Polycomb Repressive Complex 1
  • RING1 protein, human
  • Ubiquitin-Protein Ligases
  • Ubiquitin Thiolesterase