Characterization of the structure and catalytic activity of Legionella pneumophila VipF

Proteins. 2016 Oct;84(10):1422-30. doi: 10.1002/prot.25087. Epub 2016 Jul 5.

Abstract

The pathogenic bacteria Legionella pneumophila is known to cause Legionnaires' Disease, a severe pneumonia that can be fatal to immunocompromised individuals and the elderly. Shohdy et al. identified the L. pneumophila vacuole sorting inhibitory protein VipF as a putative N-acetyltransferase based on sequence homology. We have characterized the basic structural and functional properties of VipF to confirm this original functional assignment. Sequence conservation analysis indicates two putative CoA-binding regions within VipF. Homology modeling and small angle X-ray scattering suggest a monomeric, dual-domain structure joined by a flexible linker. Each domain contains the characteristic beta-splay motif found in many acetyltransferases, suggesting that VipF may contain two active sites. Docking experiments suggest reasonable acetyl-CoA binding locations within each beta-splay motif. Broad substrate screening indicated that VipF is capable of acetylating chloramphenicol and both domains are catalytically active. Given that chloramphenicol is not known to be N-acetylated, this is a surprising finding suggesting that VipF is capable of O-acetyltransferase activity. Proteins 2016; 84:1422-1430. © 2016 Wiley Periodicals, Inc.

Keywords: acetyltransferase; chloramphenicol; legionella; molecular modeling; small angle X-ray scattering.

MeSH terms

  • Acetyl Coenzyme A / chemistry*
  • Acetyl Coenzyme A / metabolism
  • Acetyltransferases / chemistry*
  • Acetyltransferases / genetics
  • Acetyltransferases / metabolism
  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Catalytic Domain
  • Chloramphenicol / chemistry*
  • Chloramphenicol / metabolism
  • Cloning, Molecular
  • Conserved Sequence
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Kinetics
  • Legionella pneumophila / chemistry
  • Legionella pneumophila / enzymology*
  • Molecular Dynamics Simulation
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Protein Domains
  • Protein Structure, Secondary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Structural Homology, Protein
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Chloramphenicol
  • Acetyl Coenzyme A
  • Acetyltransferases