An unusual strategy for the anoxic biodegradation of phthalate

ISME J. 2017 Jan;11(1):224-236. doi: 10.1038/ismej.2016.91. Epub 2016 Jul 8.

Abstract

In the past two decades, the study of oxygen-independent degradation of widely abundant aromatic compounds in anaerobic bacteria has revealed numerous unprecedented enzymatic principles. Surprisingly, the organisms, metabolites and enzymes involved in the degradation of o-phthalate (1,2-dicarboxybenzene), mainly derived from phthalate esters that are annually produced at the million ton scale, are sparsely known. Here, we demonstrate a previously unknown capacity of complete phthalate degradation in established aromatic compound-degrading, denitrifying model organisms of the genera Thauera, Azoarcus and 'Aromatoleum'. Differential proteome analyses revealed phthalate-induced gene clusters involved in uptake and conversion of phthalate to the central intermediate benzoyl-CoA. Enzyme assays provided in vitro evidence for the formation of phthaloyl-CoA by a succinyl-CoA- and phthalate-specific CoA transferase, which is essential for the subsequent oxygen-sensitive decarboxylation to benzoyl-CoA. The extreme instability of the phthaloyl-CoA intermediate requires highly balanced CoA transferase and decarboxylase activities to avoid its cellular accumulation. Phylogenetic analysis revealed phthaloyl-CoA decarboxylase as a novel member of the UbiD-like, (de)carboxylase enzyme family. Homologs of the encoding gene form a phylogenetic cluster and are found in soil, freshwater and marine bacteria; an ongoing global distribution of a possibly only recently evolved degradation pathway is suggested.

MeSH terms

  • Acyl Coenzyme A / genetics
  • Acyl Coenzyme A / metabolism
  • Anaerobiosis
  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / isolation & purification
  • Bacteria / metabolism*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biodegradation, Environmental
  • Coenzyme A-Transferases / genetics
  • Coenzyme A-Transferases / metabolism
  • Multigene Family
  • Phthalic Acids / metabolism*
  • Phylogeny

Substances

  • Acyl Coenzyme A
  • Bacterial Proteins
  • Phthalic Acids
  • benzoyl-coenzyme A
  • phthalic acid
  • succinyl-coenzyme A
  • Coenzyme A-Transferases