Sensitive detection of multiple pathogens using a single DNA probe

Biosens Bioelectron. 2016 Dec 15:86:398-405. doi: 10.1016/j.bios.2016.06.077. Epub 2016 Jun 27.

Abstract

A simple but promising electrochemical DNA nanosensor was designed, constructed and applied to differentiate a few food-borne pathogens. The DNA probe was initially designed to have a complementary region in Vibrio parahaemolyticus (VP) genome and to make different hybridization patterns with other selected pathogens. The sensor was based on a screen printed carbon electrode (SPCE) modified with polylactide-stabilized gold nanoparticles (PLA-AuNPs) and methylene blue (MB) was employed as the redox indicator binding better to single-stranded DNA. The immobilization and hybridization events were assessed using differential pulse voltammetry (DPV). The fabricated biosensor was able to specifically distinguish complementary, non-complementary and mismatched oligonucleotides. DNA was measured in the range of 2.0×10(-9)-2.0×10(-13)M with a detection limit of 5.3×10(-12)M. The relative standard deviation for 6 replications of DPV measurement of 0.2µM complementary DNA was 4.88%. The fabricated DNA biosensor was considered stable and portable as indicated by a recovery of more than 80% after a storage period of 6 months at 4-45°C. Cross-reactivity studies against various food-borne pathogens showed a reliably sensitive detection of VP.

Keywords: Electrochemical DNA biosensor; Food-borne pathogens; Methylene blue; Nucleic acid hybridization detection; Polylactide-stabilized gold nanoparticles (PLA-AuNPs).

MeSH terms

  • Complex Mixtures / analysis
  • Conductometry / instrumentation*
  • DNA Probes / analysis
  • DNA Probes / genetics*
  • DNA, Bacterial / analysis*
  • DNA, Bacterial / genetics
  • Equipment Design
  • Equipment Failure Analysis
  • Food Analysis / instrumentation
  • Food Contamination / analysis*
  • Food Microbiology / instrumentation
  • Gold / chemistry
  • Metal Nanoparticles / chemistry
  • Molecular Probe Techniques / instrumentation
  • Oligonucleotide Array Sequence Analysis / instrumentation*
  • Polyesters / chemistry
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Vibrio parahaemolyticus / genetics
  • Vibrio parahaemolyticus / isolation & purification*

Substances

  • Complex Mixtures
  • DNA Probes
  • DNA, Bacterial
  • Polyesters
  • poly(lactide)
  • Gold