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. 2017 Jan 4;45(D1):D135-D138.
doi: 10.1093/nar/gkw728. Epub 2016 Aug 19.

RNALocate: A Resource for RNA Subcellular Localizations

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Free PMC article

RNALocate: A Resource for RNA Subcellular Localizations

Ting Zhang et al. Nucleic Acids Res. .
Free PMC article

Abstract

Increasing evidence has revealed that RNA subcellular localization is a very important feature for deeply understanding RNA's biological functions after being transported into intra- or extra-cellular regions. RNALocate is a web-accessible database that aims to provide a high-quality RNA subcellular localization resource and facilitate future researches on RNA function or structure. The current version of RNALocate documents more than 37 700 manually curated RNA subcellular localization entries with experimental evidence, involving more than 21 800 RNAs with 42 subcellular localizations in 65 species, mainly including Homo sapiens, Mus musculus and Saccharomyces cerevisiae etc. Besides, RNA homology, sequence and interaction data have also been integrated into RNALocate. Users can access these data through online search, browse, blast and visualization tools. In conclusion, RNALocate will be of help in elucidating the entirety of RNA subcellular localization, and developing new prediction methods. The database is available at http://www.rna-society.org/rnalocate/.

Figures

Figure 1.
Figure 1.
The overview of the RNALocate database.
Figure 2.
Figure 2.
The hierarchical organization and statistics of RNA subcellular localization.
Figure 3.
Figure 3.
The statistics of RNA category and organism. (A) The percentage of 9 RNA categories in RNALocate database (B) The entry number of 65 organism in RNALocate database, only the organisms with ≥100 entries have been listed, respectively.

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