Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production

BMC Genomics. 2016 Sep 6;17(1):713. doi: 10.1186/s12864-016-3058-7.

Abstract

Background: Campylobacter fetus (C. fetus) can cause disease in both humans and animals. C. fetus has been divided into three subspecies: C. fetus subsp. fetus (Cff), C. fetus subsp. venerealis (Cfv) and C. fetus subsp. testudinum (Cft). Subspecies identification of mammal-associated C. fetus strains is crucial in the control of Bovine Genital Campylobacteriosis (BGC), a syndrome associated with Cfv. The prescribed methods for subspecies identification of the Cff and Cfv isolates are: tolerance to 1 % glycine and H2S production.

Results: In this study, we observed the deletion of a putative cysteine transporter in the Cfv strains, which are not able to produce H2S from L-cysteine. Phylogenetic reconstruction of the core genome single nucleotide polymorphisms (SNPs) within Cff and Cfv strains divided these strains into five different clades and showed that the Cfv clade and a Cff clade evolved from a single Cff ancestor.

Conclusions: Multiple C. fetus clades were observed, which were not consistent with the biochemical differentiation of the strains. This suggests the need for a closer evaluation of the current C. fetus subspecies differentiation, considering that the phenotypic differentiation is still applied in BGC control programs.

Keywords: Bovine Genital Campylobacteriosis; Campylobacter fetus; Core genome SNP analysis; Cysteine transporter; H2S production; Subspecies differentiation.

MeSH terms

  • Bacterial Proteins / genetics
  • Campylobacter fetus / classification*
  • Campylobacter fetus / genetics
  • Campylobacter fetus / physiology
  • Cysteine / metabolism
  • Evolution, Molecular
  • Gene Deletion
  • Genome Size
  • Genome, Bacterial*
  • Hydrogen Sulfide / metabolism*
  • Phylogeny
  • Polymorphism, Single Nucleotide
  • Sequence Analysis, DNA / methods*

Substances

  • Bacterial Proteins
  • Cysteine
  • Hydrogen Sulfide