Amide compound synthesis by adenylation domain of bacillibactin synthetase

J Antibiot (Tokyo). 2017 Apr;70(4):435-442. doi: 10.1038/ja.2016.117. Epub 2016 Oct 12.

Abstract

The adenylation domain of nonribosomal peptide synthetase (NRPS) is responsible for the selective substrate recognition and its activation (as an acyl-O-AMP intermediate) during ATP consumption. DhbE, a stand-alone adenylation domain, acts on an aromatic acid, 2,3-dihydroxybenzoic acid (DHB). This activation is the initial step of the synthesis of bacillibactin that is a high-affinity small-molecule iron chelator also termed siderophore. Subsequently, the activated DHB is transferred and attached covalently to a peptidyl carrier protein domain via a thioester bond. Adenylation domains belong to the superfamily of adenylate-forming enzymes including acetyl-CoA synthetase, acyl-CoA synthetase and firefly luciferase. We previously reported a novel N-acylation reaction for an acyl-CoA synthetase (AcsA) that originally catalyzes the formation of a thioester bond between an acid and CoA, yielding acyl-CoA. This novel reaction was also confirmed for acetyl-CoA synthetase and firefly luciferase, but not yet for an adenylation domain. Here, we for the first time demonstrated the synthesis of N-acyl-L-cysteine by a stand-alone adenylation domain, DhbE. When DHB and L-cysteine were used as substrates of DhbE, N-DHB-L-cysteine was formed. A Vmax value of 0.0156±0.0008 units mg-1 and Km values of 150±18.3 mM for L-cysteine and 0.0579±0.0260 mM for DHB were obtained in this novel reaction. Furthermore, DhbE synthesized N-benzoyl-L-cysteine when benzoic acid and L-cysteine were used as substrates. Through the N-acylation reaction of DhbE, we also succeeded in the synthesis of N-aromatic acyl compounds that have never previously been reported to be produced by this enzymatic method.

MeSH terms

  • Acetate-CoA Ligase / metabolism
  • Acylation
  • Adenine / chemistry*
  • Amides / chemical synthesis*
  • Benzoic Acid / metabolism
  • Coenzyme A Ligases / metabolism
  • Cysteine / metabolism
  • Escherichia coli / metabolism
  • Kinetics
  • Ligases / metabolism
  • Luciferases / metabolism
  • Oligopeptides / biosynthesis*
  • Substrate Specificity

Substances

  • Amides
  • Oligopeptides
  • bacillibactin
  • Benzoic Acid
  • Luciferases
  • Ligases
  • Coenzyme A Ligases
  • Acetate-CoA Ligase
  • Adenine
  • Cysteine