Dynamic domains of amyloid fibrils can be site-specifically assigned with proton detected 3D NMR spectroscopy

J Biomol NMR. 2016 Nov;66(3):159-162. doi: 10.1007/s10858-016-0069-2. Epub 2016 Oct 20.

Abstract

Several amyloid fibrils have cores framed by highly dynamic, intrinsically disordered, domains that can play important roles for function and toxicity. To study these domains in detail using solid-state NMR spectroscopy, site-specific resonance assignments are required. Although the rapid dynamics of these domains lead to considerable averaging of orientation-dependent NMR interactions and thereby line-narrowing, the proton linewidths observed in these samples is far larger than what is regularly observed in solution. Here, we show that it is nevertheless possible to record 3D HNCO, HNCA, and HNcoCA spectra on these intrinsically disordered domains and to obtain site-specific assignments.

Keywords: Amyloid fibrils; Intrinsically disordered domains; Resonance assignment; Solid-state NMR.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Amyloid / chemistry*
  • Intrinsically Disordered Proteins / chemistry
  • Magnetic Resonance Spectroscopy* / methods
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Protein Conformation
  • Protein Domains*
  • Protons*

Substances

  • Amyloid
  • Intrinsically Disordered Proteins
  • Protons